MInAS Combinations
Version
The current version is: v0.0.2.
Warning
This can be considered a pre-alpha version, and has not been reviewed nor approved by the wider palaeogenomics community nor by the Genomics Standards Consortium.
The following submission combinations have been proposed by the SPAAM community to act as starting points for discussions. Not all types of ancient DNA research will currently be covered here, however the sub-fields should cover the vast majority of current research in the field. As the MInAS project develops, these default minimum-information submission combinations will be extended to include other areas.
All MInAS submission combinations will include the Ancient extension.
| Category | Submission Combination | Context | Palaeogenomics example | Downloadable version |
|---|---|---|---|---|
| Reads | Host-associatedMIMS + Ancient | Ancient eukaryote reads | Ancient human or animal reads (unmapped or mapped) | Click Here |
| Reads | Host-associatedMIMS + Ancient | Ancient plant reads | Ancient plant reads (unmapped or mapped) | Click Here |
| Reads | Host-associatedMIMS + Ancient | Ancient bacterial reads | Ancient bacterial pathogen reads from skeletal material (unmapped or mapped) | Click Here |
| Reads | Host-associatedMIMS + Ancient | Ancient virus reads | Ancient virus pathogen reads from skeletal material (unmapped or mapped) | Click Here |
| Reads | Host-associatedMIMS + Ancient | Ancient microbiome reads | Ancient oral [dental calculus]; gut [palaeofaeces] microbiomes (reads) | Click Here |
| Reads | SedimentMIMS + Ancient | Ancient bacterial reads | Ancient bacterial pathogen reads from sediment (unmapped or mapped) | nan |
| Reads | SedimentMIMS + Ancient | Ancient virus reads | Ancient virus pathogen reads from sediment (unmapped or mapped) | nan |
| Reads | SedimentMIMS + Ancient | Ancient microbiome reads | sedaDNA (reads) | nan |
| Assembly | Host-associatedMIMAG + Ancient | Ancient bacterial contigs | Ancient pathogen [bacteria] (metagenomic de novo assembly) | nan |
| Assembly | Host-associatedMIMAG + Ancient | Ancient virus contigs | Ancient pathogen [virus] (metagenomic de novo assembly) | nan |
| Assembly | Host-associatedMIMAG + Ancient | Ancient microbiome contigs | Ancient pathogen [bacteria/virus]; oral [dental calculus] or gut [palaeofaeces] microbiomes (metagenomic de novo assembly) | nan |
| Assembly | SedimentMIMAG + Ancient | Ancient metagenome contigs | sedaDNA (metagenomic de novo assembly) | nan |
| Genome | Host-associatedMIGSBacteria + Ancient | Ancient bacterial genome | Ancient pathogen (assembled whole genome sequence) | Click Here |
| Genome | Host-associatedMIUVIG + Ancient | Ancient viral genome | Ancient pathogen (assembled whole genome sequence) | Click Here |
| Genome | Host-associatedMIGSEukaryote + Ancient | Ancient eukaryote genome | Ancient human or animal genome or genome-wide data (assembled whole genome sequence) | nan |
| Genome | Plant-associatedMIGSPlant + Ancient | Ancient plant genome | Ancient plant genome or genome-wide data (assembled whole genome sequence) | nan |